Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1546558 chr1:227454820 T/G 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs1550035 chr6:80730848 C/G 2.35E-6 119 25.83 40.3 41.7 KM Plot
THYM rs1563363 chr15:94814873 A/G 5.47E-6 117 25.83 29.18 44.38 KM Plot
THYM rs1567801 chr1:227393686 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs1567802 chr1:227394185 T/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs1573933 chr15:93977249 C/A 4.24E-13 117 40.67 50.07 6 KM Plot
THYM rs159429 chr3:9834352 G/C 1.19E-5 115 36.03 53.63 33.25 KM Plot
THYM rs1606550 chr1:227437154 A/C 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs1612616 chr2:30676422 C/T 4.59E-7 118 38.33 46.23 13.23 KM Plot
THYM rs1614348 chr2:30676618 G/A 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs1615605 chr2:30657532 A/T 3.02E-10 119 38.13 50.07 13.23 KM Plot
THYM rs1616259 chr2:30676878 A/G 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs1618709 chr12:121606917 C/T 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs1619628 chr12:121607052 A/G 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs1621388 chr12:121622563 G/A 3.9E-5 115 42.73 46.27 23.9 KM Plot